Cluster Gauss-Newton method for a quick approximation of profile likelihood: With application to physiologically-based pharmacokinetic models
2023-10-01
发表期刊CPT-PHARMACOMETRICS & SYSTEMS PHARMACOLOGY (IF:3.1[JCR-2023],3.6[5-Year])
ISSN2163-8306
发表状态已发表
DOI10.1002/psp4.13055
摘要

Physiologically-based pharmacokinetic (PBPK) models can be challenging to work with because they can have too many parameters to identify from observable data. The profile likelihood method can help solve this issue by determining parameter identifiability and confidence intervals, but it involves repetitive parameter optimizations that can be time-consuming. The Cluster Gauss-Newton method (CGNM) is a parameter estimation method that efficiently searches through a wide range of parameter space. In this study, we propose a method that approximates the profile likelihood by reusing intermediate computation results from CGNM, allowing us to obtain the upper bounds of the profile likelihood without conducting additional model evaluation. This method allows us to quickly draw approximate profile likelihoods for all unknown parameters. Additionally, the same approach can be used to draw two-dimensional profile likelihoods for all parameter combinations within seconds. We demonstrate the effectiveness of this method on three PBPK models.

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收录类别SCI
语种英语
WOS研究方向Pharmacology & Pharmacy
WOS类目Pharmacology & Pharmacy
WOS记录号WOS:001085409500001
出版者WILEY
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文献类型期刊论文
条目标识符https://kms.shanghaitech.edu.cn/handle/2MSLDSTB/346492
专题iHuman研究所
iHuman研究所_特聘教授组_Yuichi Sugiyama组
通讯作者Sugiyama, Yuichi
作者单位
1.AstraZeneca, BioPharmaceut R&D, Cardiovasc Renal & Metab CVRM, Drug Metab & Pharmacokinet Res & Early Dev, Gothenburg, Sweden
2.Josai Int Univ, Lab Quantitat Syst Pharmacokinet Pharmacodynam, 2-3-11 Hirakawa Cho,Chiyoda Ku, Tokyo 1020093, Japan
3.ShanghaiTech Univ, iHuman Inst, Shanghai, Peoples R China
通讯作者单位iHuman研究所
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GB/T 7714
Aoki, Yasunori,Sugiyama, Yuichi. Cluster Gauss-Newton method for a quick approximation of profile likelihood: With application to physiologically-based pharmacokinetic models[J]. CPT-PHARMACOMETRICS & SYSTEMS PHARMACOLOGY,2023.
APA Aoki, Yasunori,&Sugiyama, Yuichi.(2023).Cluster Gauss-Newton method for a quick approximation of profile likelihood: With application to physiologically-based pharmacokinetic models.CPT-PHARMACOMETRICS & SYSTEMS PHARMACOLOGY.
MLA Aoki, Yasunori,et al."Cluster Gauss-Newton method for a quick approximation of profile likelihood: With application to physiologically-based pharmacokinetic models".CPT-PHARMACOMETRICS & SYSTEMS PHARMACOLOGY (2023).
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