Programmable C-to-U RNA editing using the human APOBEC3A deaminase
2020-11-16
发表期刊EMBO JOURNAL (IF:9.4[JCR-2023],11.0[5-Year])
ISSN0261-4189
发表状态已发表
DOI10.15252/embj.2020104741
摘要

Programmable RNA cytidine deamination has recently been achieved using a bifunctional editor (RESCUE-S) capable of deaminating both adenine and cysteine. Here, we report the development of "CURE", the first cytidine-specific C-to-U RNA Editor. CURE comprises the cytidine deaminase enzyme APOBEC3A fused to dCas13 and acts in conjunction with unconventional guide RNAs (gRNAs) designed to induce loops at the target sites. Importantly, CURE does not deaminate adenosine, enabling the high-specificity versions of CURE to create fewer missense mutations than RESCUE-S at the off-targets transcriptome-wide. The two editing approaches exhibit overlapping editing motif preferences, with CURE and RESCUE-S being uniquely able to edit UCC and AC motifs, respectively, while they outperform each other at different subsets of the UC targets. Finally, a nuclear-localized version of CURE, but not that of RESCUE-S, can efficiently edit nuclear RNAs. Thus, CURE and RESCUE are distinct in design and complementary in utility.

关键词Apobec programmable RESCUE RNA editing site-directed RNA editing
收录类别SCI ; SCIE
资助项目National Natural Science Foundation of China[31922048]
WOS研究方向Biochemistry & Molecular Biology ; Cell Biology
WOS类目Biochemistry & Molecular Biology ; Cell Biology
WOS记录号WOS:000577671500001
出版者WILEY
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文献类型期刊论文
条目标识符https://kms.shanghaitech.edu.cn/handle/2MSLDSTB/123488
专题生命科学与技术学院_博士生
生命科学与技术学院_PI研究组_池天组
生命科学与技术学院_PI研究组_黄行许组
生命科学与技术学院_硕士生
共同第一作者Lv, Junjun; Li, Yongqin
通讯作者Zuo, Erwei; Chi, Tian
作者单位
1.ShanghaiTech Univ, Sch Life Sci & Technol, Shanghai, Peoples R China;
2.Univ Chinese Acad Sci, Beijing, Peoples R China;
3.Chinese Acad Agr Sci, Agr Genom Inst Shenzhen, Guangdong Lab Lingnan Modern Agr, Shenzhen Branch,Genome Anal Lab,Minist Agr, Shenzhen, Peoples R China;
4.Chinese Acad Sci, Shanghai Res Ctr Brain Sci & Brain Inspired Intel, Shanghai Inst Biol Sci,CAS Ctr Excellence Brain S, Inst Neurosci,State Key Lab Neurosci,Key Lab Prim, Shanghai, Peoples R China;
5.Yale Univ, Sch Med, Dept Immunobiol, New Haven, CT 06520 USA
第一作者单位生命科学与技术学院
通讯作者单位生命科学与技术学院
第一作者的第一单位生命科学与技术学院
推荐引用方式
GB/T 7714
Huang, Xinxin,Lv, Junjun,Li, Yongqin,et al. Programmable C-to-U RNA editing using the human APOBEC3A deaminase[J]. EMBO JOURNAL,2020.
APA Huang, Xinxin.,Lv, Junjun.,Li, Yongqin.,Mao, Shaoshuai.,Li, Zhifang.,...&Chi, Tian.(2020).Programmable C-to-U RNA editing using the human APOBEC3A deaminase.EMBO JOURNAL.
MLA Huang, Xinxin,et al."Programmable C-to-U RNA editing using the human APOBEC3A deaminase".EMBO JOURNAL (2020).
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