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Surfaceome CRISPR screen identifies OLFML3 as a rhinovirus-inducible IFN antagonist
2021-10-22
发表期刊GENOME BIOLOGY (IF:10.1[JCR-2023],16.5[5-Year])
ISSN1474-760X
卷号22期号:1
发表状态已发表
DOI10.1186/s13059-021-02513-w
摘要

Background Rhinoviruses (RVs) cause more than half of common colds and, in some cases, more severe diseases. Functional genomics analyses of RVs using siRNA or genome-wide CRISPR screen uncovered a limited set of host factors, few of which have proven clinical relevance. Results Herein, we systematically compare genome-wide CRISPR screen and surface protein-focused CRISPR screen, referred to as surfaceome CRISPR screen, for their efficiencies in identifying RV host factors. We find that surfaceome screen outperforms the genome-wide screen in the success rate of hit identification. Importantly, using the surfaceome screen, we identify olfactomedin-like 3 (OLFML3) as a novel host factor of RV serotypes A and B, including a clinical isolate. We find that OLFML3 is a RV-inducible suppressor of the innate immune response and that OLFML3 antagonizes type I interferon (IFN) signaling in a SOCS3-dependent manner. Conclusion Our study suggests that RV-induced OLFML3 expression is an important mechanism for RV to hijack the immune system and underscores surfaceome CRISPR screen in identifying viral host factors.

关键词CRISPR Genome-wide screen Surfaceome screen Rhinovirus OLFML3
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收录类别SCIE
语种英语
WOS研究方向Biotechnology & Applied Microbiology ; Genetics & Heredity
WOS类目Biotechnology & Applied Microbiology ; Genetics & Heredity
WOS记录号WOS:000710145000002
出版者BMC
原始文献类型Article
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文献类型期刊论文
条目标识符https://kms.shanghaitech.edu.cn/handle/2MSLDSTB/128507
专题免疫化学研究所_公共科研平台_生物医学大数据平台
免疫化学研究所_特聘教授组_抗体设计学实验室
生命科学与技术学院_硕士生
生命科学与技术学院_博士生
免疫化学研究所_PI研究组_刘佳组
通讯作者Qu, Jieming; Liu, Jia
作者单位
1.ShanghaiTech Univ, Shanghai Inst Adv Immunochem Studies, Shanghai 201210, Peoples R China;
2.ShanghaiTech Univ, Sch Life Sci & Technol, Shanghai 201210, Peoples R China;
3.Shanghai Jiao Tong Univ, Ruijin Hosp, Sch Med, Dept Resp & Crit Care Med, Shanghai 200025, Peoples R China;
4.Shanghai Jiao Tong Univ, Inst Resp Dis, Sch Med, Shanghai 200025, Peoples R China;
5.Univ Chinese Acad Sci, Beijing 100049, Peoples R China;
6.Shanghai Jiao Tong Univ, Ruijin Hosp, Res Lab Clin Virol, Sch Med, Shanghai 200025, Peoples R China;
7.Shanghai Clin Res & Trial Ctr, Shanghai 201210, Peoples R China;
8.Guangzhou Med Univ, State Key Lab Resp Dis, Guangzhou 510182, Guangdong, Peoples R China;
9.ShanghaiTech Univ, Gene Editing Ctr, Sch Life Sci & Technol, Shanghai 201210, Peoples R China;
10.Guangzhou Lab, 9 XingDaoHuanBei Rd, Guangzhou 510005, Guangdong, Peoples R China
第一作者单位免疫化学研究所;  生命科学与技术学院
通讯作者单位免疫化学研究所;  生命科学与技术学院
第一作者的第一单位免疫化学研究所
推荐引用方式
GB/T 7714
Mei, Hong,Zha, Zhao,Wang, Wei,et al. Surfaceome CRISPR screen identifies OLFML3 as a rhinovirus-inducible IFN antagonist[J]. GENOME BIOLOGY,2021,22(1).
APA Mei, Hong.,Zha, Zhao.,Wang, Wei.,Xie, Yusang.,Huang, Yuege.,...&Liu, Jia.(2021).Surfaceome CRISPR screen identifies OLFML3 as a rhinovirus-inducible IFN antagonist.GENOME BIOLOGY,22(1).
MLA Mei, Hong,et al."Surfaceome CRISPR screen identifies OLFML3 as a rhinovirus-inducible IFN antagonist".GENOME BIOLOGY 22.1(2021).
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