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DNFE: Directed-network flow entropy for detecting the tipping points during biological processes
预印本
2024
作者:
Peng, Xueqing
;
Li, Peiluan
;
Luonan, Chen
收藏
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浏览/下载:198/0
|
提交时间:2024/10/08
directed network
scRNA-seq
critical states
dynamic network biomarker
transcription factor
An oncolytic HSV-1 armed with Visfatin enhances antitumor effects by remodeling tumor microenvironment against murine pancreatic cancer
期刊论文
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2024, 卷号: 718
作者:
Zhao, Jiliang
;
Wang, Han
;
Chen, Jinhua
;
Wang, Chunlei
;
Gong, Nanxin
Adobe PDF(5691Kb)
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收藏
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浏览/下载:262/0
|
提交时间:2024/06/17
Oncolytic virus
Visfatin
Tumor microenvironment
scRNA-seq
PD-1 antibody
PDAC
High-throughput mapping of single-neuron projection and molecular features by retrograde barcoded labeling
期刊论文
ELIFE, 2024, 卷号: 13
作者:
Xu, Peibo
;
Peng, Jian
;
Yuan, Tingli
;
Chen, Zhaoqin
;
He, Hui
Adobe PDF(6171Kb)
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浏览/下载:296/1
|
提交时间:2024/05/14
scRNA-seq
connectome
mPFC
Mouse
Combining single-cell RNA sequencing with spatial transcriptome analysis reveals dynamic molecular maps of cambium differentiation in the primary and secondary growth of trees
期刊论文
PLANT COMMUNICATIONS, 2023, 卷号: 4, 期号: 5
作者:
Adobe PDF(7835Kb)
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浏览/下载:271/0
|
提交时间:2023/10/31
scRNA-seq
spatial transcriptome
primary growth
secondary growth
secondary cell wall
SCW
Populus
Intermittent protein restriction improves glucose homeostasis in Zucker diabetic fatty rats and single-cell sequencing reveals distinct changes in β cells
期刊论文
JOURNAL OF NUTRITIONAL BIOCHEMISTRY;, 2023, 卷号: 114
作者:
Li, Chenchen
;
Zhu, Jing
Adobe PDF(5235Kb)
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收藏
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浏览/下载:267/1
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提交时间:2023/03/24
Islets
Protein restriction
scRNA-seq
Type 2 diabetes
ZDF rats
TMELand: An end-to-end Pipeline for Quantification and Visualization of Waddingtons Epigenetic Landscape based on Gene Regulatory Network
期刊论文
IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2023, 卷号: PP, 期号: 99, 页码: 1-9
作者:
Lin Zhu
;
Xin Kang
;
Chunhe Li
;
Jie Zheng
Adobe PDF(4456Kb)
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收藏
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浏览/下载:278/0
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提交时间:2023/07/14
Boolean algebra
Cytology
Data visualization
Differential equations
Gene expression
Hopfield neural networks
Cell-fate
End to end
Epigenetics
Gene regulatory networks
ScRNA-seq data
State transition path
State transitions
Transition paths
Waddington epigenetic landscape
Somatosensory neurons express specific sets of lincRNAs, and lincRNA CLAP promotes itch sensation in mice
期刊论文
EMBO REPORTS, 2022
作者:
Wang, Bin
;
Jiang, Bowen
;
Li, Guo-Wei
Adobe PDF(6363Kb)
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收藏
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浏览/下载:361/0
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提交时间:2023/02/03
cell-type-specific lincRNA
itch sensation
scRNA-seq
somatosensory neuron
Intermittent protein restriction protects islet β cells and improves glucose homeostasis in diabetic mice
期刊论文
SCIENCE BULLETIN, 2022, 卷号: 67, 期号: 7
作者:
Wei, Siying
;
Li, Chenchen
;
Luo, Xuemei
;
Yang, Lanzexin
;
Yu, Long
Adobe PDF(7982Kb)
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浏览/下载:359/2
|
提交时间:2022/03/04
Cells
Cytology
Glucose
Mammals
Muscle
Nutrition
Diabetes intervention
Diabetic mice
Environmental factors
Genetic factors
Glucose homeostasis
Islet
Nutritional intervention
Protein restriction
ScRNA-seq
Streptozotocin
SCAPTURE: a deep learning-embedded pipeline that captures polyadenylation information from 3 ' tag-based RNA-seq of single cells
期刊论文
GENOME BIOLOGY, 2021, 卷号: 22, 期号: 1
作者:
Li, Guo-Wei
;
Nan, Fang
;
Yuan, Guo-Hua
;
Liu, Chu-Xiao
;
Liu, Xindong
Adobe PDF(3599Kb)
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收藏
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浏览/下载:462/92
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提交时间:2021/08/20
scRNA-seq
PAS
APA
Deep learning
Peak calling
Transcript quantification
A Single-Cell RNA Sequencing Profiles the Developmental Landscape of Arabidopsis Root
期刊论文
MOLECULAR PLANT, 2019, 卷号: 12, 期号: 5, 页码: 648-660
作者:
Zhang, Tian-Qi
;
Xu, Zhou-Geng
;
Shang, Guan-Dong
;
Wang, Jia-Wei
Adobe PDF(3838Kb)
|
收藏
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浏览/下载:454/3
|
提交时间:2019/06/04
Arabidopsis
root
scRNA-seq
cell atlas
differentiation trajectory
meristem
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