Combining single-cell RNA sequencing with spatial transcriptome analysis reveals dynamic molecular maps of cambium differentiation in the primary and secondary growth of trees
2023-09-11
发表期刊PLANT COMMUNICATIONS
ISSN2590-3462
卷号4期号:5
发表状态已发表
DOI10.1016/j.xplc.2023.100665
摘要

Primary and secondary growth of the tree stem are responsible for corresponding increases in trunk height and diameter. However, our molecular understanding of the biological processes that underlie these two types of growth is incomplete. In this study, we used single-cell RNA sequencing and spatial transcriptome sequencing to reveal the transcriptional landscapes of primary and secondary growth tissues in the Populus stem. Comparison between the cell atlas and differentiation trajectory of primary and secondary growth revealed different regulatory networks involved in cell differentiation from cambium to xylem precursors and phloem precursors. These regulatory networks may be controlled by auxin accumulation and distribution. Analysis of cell differentiation trajectories suggested that vessel and fiber development followed a sequential pattern of progressive transcriptional regulation. This research provides new insights into the processes of cell identity and differentiation that occur throughout primary and secondary growth of tree stems, increasing our understanding of the cellular differentiation dynamics that occur during stem growth in trees.

关键词scRNA-seq spatial transcriptome primary growth secondary growth secondary cell wall SCW Populus
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收录类别SCI
语种英语
资助项目National Natural Science Foundation of China[32130072] ; Chinese Academy of Sciences' Strategic Priority Research Program[XDB27020104] ; National Key Research and Development Program[2021YFD2200204]
WOS研究方向Biochemistry & Molecular Biology ; Plant Sciences
WOS类目Biochemistry & Molecular Biology ; Plant Sciences
WOS记录号WOS:001081156100001
出版者ELSEVIER
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文献类型期刊论文
条目标识符https://kms.shanghaitech.edu.cn/handle/2MSLDSTB/343595
专题生命科学与技术学院
生命科学与技术学院_特聘教授组_王佳伟组
通讯作者Li, Laigeng
作者单位
1.Chinese Acad Sci, Inst Plant Physiol & Ecol, Natl Key Lab Plant Mol Genet, Shanghai 200032, Peoples R China
2.Chinese Acad Sci, Inst Plant Physiol & Ecol, CAS Ctr Excellence Mol Plant Sci, Shanghai 200032, Peoples R China
3.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
4.ShanghaiTech Univ, Sch Life Sci & Technol, Shanghai 201210, Peoples R China
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GB/T 7714
Li, Renhui,Wang, Zhifeng,Wang, Jia-Wei,et al. Combining single-cell RNA sequencing with spatial transcriptome analysis reveals dynamic molecular maps of cambium differentiation in the primary and secondary growth of trees[J]. PLANT COMMUNICATIONS,2023,4(5).
APA Li, Renhui,Wang, Zhifeng,Wang, Jia-Wei,&Li, Laigeng.(2023).Combining single-cell RNA sequencing with spatial transcriptome analysis reveals dynamic molecular maps of cambium differentiation in the primary and secondary growth of trees.PLANT COMMUNICATIONS,4(5).
MLA Li, Renhui,et al."Combining single-cell RNA sequencing with spatial transcriptome analysis reveals dynamic molecular maps of cambium differentiation in the primary and secondary growth of trees".PLANT COMMUNICATIONS 4.5(2023).
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