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Combining single-cell RNA sequencing with spatial transcriptome analysis reveals dynamic molecular maps of cambium differentiation in the primary and secondary growth of trees | |
2023-09-11 | |
发表期刊 | PLANT COMMUNICATIONS
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ISSN | 2590-3462 |
卷号 | 4期号:5 |
发表状态 | 已发表 |
DOI | 10.1016/j.xplc.2023.100665 |
摘要 | Primary and secondary growth of the tree stem are responsible for corresponding increases in trunk height and diameter. However, our molecular understanding of the biological processes that underlie these two types of growth is incomplete. In this study, we used single-cell RNA sequencing and spatial transcriptome sequencing to reveal the transcriptional landscapes of primary and secondary growth tissues in the Populus stem. Comparison between the cell atlas and differentiation trajectory of primary and secondary growth revealed different regulatory networks involved in cell differentiation from cambium to xylem precursors and phloem precursors. These regulatory networks may be controlled by auxin accumulation and distribution. Analysis of cell differentiation trajectories suggested that vessel and fiber development followed a sequential pattern of progressive transcriptional regulation. This research provides new insights into the processes of cell identity and differentiation that occur throughout primary and secondary growth of tree stems, increasing our understanding of the cellular differentiation dynamics that occur during stem growth in trees. |
关键词 | scRNA-seq spatial transcriptome primary growth secondary growth secondary cell wall SCW Populus |
URL | 查看原文 |
收录类别 | SCI |
语种 | 英语 |
资助项目 | National Natural Science Foundation of China[32130072] ; Chinese Academy of Sciences' Strategic Priority Research Program[XDB27020104] ; National Key Research and Development Program[2021YFD2200204] |
WOS研究方向 | Biochemistry & Molecular Biology ; Plant Sciences |
WOS类目 | Biochemistry & Molecular Biology ; Plant Sciences |
WOS记录号 | WOS:001081156100001 |
出版者 | ELSEVIER |
引用统计 | |
文献类型 | 期刊论文 |
条目标识符 | https://kms.shanghaitech.edu.cn/handle/2MSLDSTB/343595 |
专题 | 生命科学与技术学院 生命科学与技术学院_特聘教授组_王佳伟组 |
通讯作者 | Li, Laigeng |
作者单位 | 1.Chinese Acad Sci, Inst Plant Physiol & Ecol, Natl Key Lab Plant Mol Genet, Shanghai 200032, Peoples R China 2.Chinese Acad Sci, Inst Plant Physiol & Ecol, CAS Ctr Excellence Mol Plant Sci, Shanghai 200032, Peoples R China 3.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 4.ShanghaiTech Univ, Sch Life Sci & Technol, Shanghai 201210, Peoples R China |
推荐引用方式 GB/T 7714 | Li, Renhui,Wang, Zhifeng,Wang, Jia-Wei,et al. Combining single-cell RNA sequencing with spatial transcriptome analysis reveals dynamic molecular maps of cambium differentiation in the primary and secondary growth of trees[J]. PLANT COMMUNICATIONS,2023,4(5). |
APA | Li, Renhui,Wang, Zhifeng,Wang, Jia-Wei,&Li, Laigeng.(2023).Combining single-cell RNA sequencing with spatial transcriptome analysis reveals dynamic molecular maps of cambium differentiation in the primary and secondary growth of trees.PLANT COMMUNICATIONS,4(5). |
MLA | Li, Renhui,et al."Combining single-cell RNA sequencing with spatial transcriptome analysis reveals dynamic molecular maps of cambium differentiation in the primary and secondary growth of trees".PLANT COMMUNICATIONS 4.5(2023). |
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