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Modular Graph Encoding and Hierarchical Readout for Functional Brain Network Based eMCI Diagnosis
2022
会议录名称LECTURE NOTES IN COMPUTER SCIENCE (INCLUDING SUBSERIES LECTURE NOTES IN ARTIFICIAL INTELLIGENCE AND LECTURE NOTES IN BIOINFORMATICS)
ISSN0302-9743
卷号13754 LNCS
页码69-78
发表状态已发表
DOI10.1007/978-3-031-21083-9_7
摘要

The functional brain network, estimated from functional magnetic resonance imaging (fMRI), have been widely used to capture subtle brain function abnormality and perform diagnosis of brain diseases, such as early mild cognitive impairment (eMCI), i.e., with Graph Convolutional Network (GCN). However, there are at least two issues with GCN-based diagnosis methods, i.e., (1) over-smoothed representation of nodal features after using general convolutional kernels, and (2) simple blind readout of graph features without considering hierarchical organizations of brain functions. To address these two issues, we propose a GCN-based architecture (HFBN-GCN), based on the hierarchical functional brain network (defined with priors from brain atlases). Specifically, first, we design a "topology-focused brain encoder" to enhance nodal features by using (1) one branch of GCNs to focus on limited message passing among functional modules of each hierarchical level for alleviating over-smoothing issue and (2) another branch of GCNs to processes whole brain network for retaining original communication of information. Second, we design a "hierarchical brain readout" to utilize pre-defined hierarchical information to guide the coarse-to-fine readout process. We evaluate our proposed HFBN-GCN on the ADNI dataset with 910 fMRI data. Our proposed method achieves 73.4% accuracy (with 77.1% sensitivity and 71.1% specificity) in eMCI diagnosis, where both proposed strategies help boost performance compared to simply-stacked GCNs. In addition, our method suggests the dorsal attention network, saliency network and default mode network as the most crucial functional sub-networks for eMCI identifications. Our method thus is potentially beneficial for both clinical applications and neurological studies. © 2022, The Author(s), under exclusive license to Springer Nature Switzerland AG.

关键词Convolution Functional neuroimaging Graph neural networks Magnetic resonance imaging Message passing Network coding Brain functions Brain networks Cognitive impairment Convolutional networks Early mild cognitive impairment Functional magnetic resonance imaging Graph convolutional network Graph encoding Modular graph Network-based
会议名称1st International Workshop on Imaging Systems for GI Endoscopy, ISGIE 2022 and 4th International Workshop on GRaphs in biomedicAl Image anaLysis, GRAIL 2022 held in Conjunction with 25th International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2022
出版地GEWERBESTRASSE 11, CHAM, CH-6330, SWITZERLAND
会议地点Singapore, Singapore
会议日期September 18, 2022 - September 18, 2022
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收录类别EI ; CPCI-S
语种英语
WOS研究方向Computer Science ; Gastroenterology & Hepatology ; Radiology, Nuclear Medicine & Medical Imaging
WOS类目Computer Science, Artificial Intelligence ; Computer Science, Interdisciplinary Applications ; Gastroenterology & Hepatology ; Radiology, Nuclear Medicine & Medical Imaging
WOS记录号WOS:000925204900007
出版者Springer Science and Business Media Deutschland GmbH
EI入藏号20230113332485
EI主题词Diagnosis
EISSN1611-3349
EI分类号461.1 Biomedical Engineering ; 461.6 Medicine and Pharmacology ; 701.2 Magnetism: Basic Concepts and Phenomena ; 716.1 Information Theory and Signal Processing ; 723.1 Computer Programming ; 723.2 Data Processing and Image Processing ; 723.4 Artificial Intelligence ; 746 Imaging Techniques
原始文献类型Conference article (CA)
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文献类型会议论文
条目标识符https://kms.shanghaitech.edu.cn/handle/2MSLDSTB/282067
专题信息科学与技术学院_硕士生
信息科学与技术学院_PI研究组_张玉瑶组
生物医学工程学院_PI研究组_沈定刚组
生物医学工程学院_PI研究组_张寒组
通讯作者Shen, Dinggang
作者单位
1.Shanghaitech Univ, Sch Biomed Engn, Shanghai, Peoples R China
2.Shanghaitech Univ, Sch Informat Sci & Technol, Shanghai, Peoples R China
3.Shanghai United Imaging Intelligence Co Ltd, Shanghai, Peoples R China
第一作者单位生物医学工程学院;  信息科学与技术学院
通讯作者单位生物医学工程学院
第一作者的第一单位生物医学工程学院
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GB/T 7714
Mei, Lang,Liu, Mianxin,Bian, Lingbin,et al. Modular Graph Encoding and Hierarchical Readout for Functional Brain Network Based eMCI Diagnosis[C]. GEWERBESTRASSE 11, CHAM, CH-6330, SWITZERLAND:Springer Science and Business Media Deutschland GmbH,2022:69-78.
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