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ShanghaiTech University Knowledge Management System
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CIRCexplorer pipelines for circRNA annotation and quantification from non-polyadenylated RNA-seq datasets
期刊论文
METHODS, 2021, 卷号: 196
作者:
Ma, Xu-Kai
;
Xue, Wei
;
Chen, Ling-Ling
;
Yang, Li
Adobe PDF(2930Kb)
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收藏
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浏览/下载:302/0
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提交时间:2022/02/11
Circular RNA
CircRNA
CIRCexplorer
Alternative back-splicing
Non-polyadenylated RNA-seq
A 5 '-tRNA halve, tiRNA-Gly promotes cell proliferation and migration via binding to RBM17 and inducing alternative splicing in papillary thyroid cancer
期刊论文
JOURNAL OF EXPERIMENTAL & CLINICAL CANCER RESEARCH, 2021, 卷号: 40, 期号: 1
作者:
Han, Litao
;
Lai, Hejing
;
Yang, Yichen
;
Hu, Jiaqian
;
Li, Zhe
Adobe PDF(7978Kb)
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收藏
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浏览/下载:876/301
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提交时间:2021/08/16
tiRNA-Gly
RBM17
Alternative splicing
MAP4K4
Papillary thyroid carcinoma
Fast and furious: insights of back splicing regulation during nascent RNA synthesis
期刊论文
SCIENCE CHINA-LIFE SCIENCES, 2021, 页码: #VALUE!
作者:
Xue, Wei
;
Ma, Xu-Kai
;
Yang, Li
Adobe PDF(2142Kb)
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收藏
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浏览/下载:265/0
|
提交时间:2021/04/01
alternative splicing
back splicing
deep sequencing
nascent RNA-seq
metabolic tagging
4sUDRB-seq
transcription
recursive splicing
Differential Transcription and Alternative Splicing in Cotton Underly Specialized Defense Responses Against Pests
期刊论文
FRONTIERS IN PLANT SCIENCE, 2020, 卷号: 11
作者:
Chen, Dian-Yang
;
Chen, Qiu-Yi
;
Wang, Dan-Dan
;
Mu, Yu-Pei
;
Wang, Mu-Yang
Adobe PDF(2697Kb)
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浏览/下载:589/221
|
提交时间:2020/11/02
plant defense
Apolygus lucorum
Helicoverpa armigera
jasmonate signaling
alternative splicing
Human PRPF40B regulates hundreds of alternative splicing targets and represses a hypoxia expression signature
期刊论文
RNA, 2019, 卷号: 25, 期号: 8, 页码: 905-920
作者:
Lorenzini, Paolo Alberto
;
Chew, Resilind Su Ern
;
Tan, Cheryl Weiqi
;
Yong, Jing Yen
;
Zhang, Fan
Adobe PDF(9061Kb)
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收藏
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浏览/下载:754/11
|
提交时间:2019/08/20
alternative splicing
PRPF40B
hypoxia
myelodysplastic syndromes
acute myeloid leukemia
Large-scale prediction of ADAR-mediated effective human A-to-I RNA editing
期刊论文
BRIEFINGS IN BIOINFORMATICS, 2019, 卷号: 20, 期号: 1, 页码: 102-109
作者:
Yao, Li
;
Wang, Heming
;
Song, Yuanyuan
;
Dai, Zhen
;
Yu, Hao
Adobe PDF(818Kb)
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收藏
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浏览/下载:559/1
|
提交时间:2019/02/15
RNA editing
microRNA targeting
alternative mRNA splicing
gene mutation
CircRNAFisher: a systematic computational approach for de novo circular RNA identification
期刊论文
ACTA PHARMACOLOGICA SINICA, 2019, 卷号: 40, 期号: 1, 页码: 55-63
作者:
Jia, Guo-yi
;
Wang, Duo-lin
;
Xue, Meng-zhu
;
Liu, Yu-wei
Adobe PDF(1608Kb)
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收藏
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浏览/下载:478/0
|
提交时间:2019/01/18
circRNA
RNA-Seq
alternative splicing
pipeline
Intrinsically Disordered Proteins Link Alternative Splicing and Post-translational Modifications to Complex Cell Signaling and Regulation
期刊论文
JOURNAL OF MOLECULAR BIOLOGY, 2018, 卷号: 430, 期号: 16, 页码: 2342-2359
作者:
Zhou, Jianhong
;
Zhao, Suwen
;
Dunker, A. Keith
Adobe PDF(3219Kb)
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收藏
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浏览/下载:797/1
|
提交时间:2018/08/09
intrinsic disorder
alternative splicing
post-translational modification
differential and context-dependent signaling
signaling modulation and regulation
Conservation, evolution, and regulation of splicing during prefrontal cortex development in humans, chimpanzees, and macaques
期刊论文
RNA, 2018, 卷号: 24, 期号: 4, 页码: 585-596
作者:
Mazin, Pavel V.
;
Jiang, Xi
;
Fu, Ning
;
Han, Dingding
;
Guo, Meng
Adobe PDF(4458Kb)
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浏览/下载:560/1
|
提交时间:2018/04/11
transcriptomics
RNA-seq
alternative splicing
brain development
A Human Disease-causing Point Mutation in Mitochondrial Threonyl-tRNA Synthetase Induces Both Structural and Functional Defects
期刊论文
JOURNAL OF BIOLOGICAL CHEMISTRY, 2016, 卷号: 291, 期号: 12, 页码: 6507-6520
作者:
Wang, Yong
;
Zhou, Xiao-Long
;
Ruan, Zhi-Rong
;
Liu, Ru-Juan
;
Eriani, Gilbert
Adobe PDF(2056Kb)
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收藏
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浏览/下载:1248/385
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提交时间:2017/07/04
alternative splicing
aminoacyl-tRNA synthetase
enzyme kinetics
mitochondria
mitochondrial disease
threonyl-tRNA synthetase
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