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scICML: Information-Theoretic Co-Clustering-Based Multi-View Learning for the Integrative Analysis of Single-Cell Multi-Omics Data
期刊论文
IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2024, 卷号: 21, 期号: 1, 页码: 200-207
作者:
Zeng, Pengcheng
;
Lin, Zhixiang
Adobe PDF(1032Kb)
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浏览/下载:282/42
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提交时间:2024/03/08
Clustering
multi-view learning
single-cell multi-omics integration
Bioinformatics
Cytology
Data integration
Gene expression
Information analysis
Information theory
Pattern matching
'omics'
Clusterings
Genes expression
Genomics
Multi-view learning
Mutual informations
Optimisations
Pattern-matching
Single cells
Single-cell multi-omic integration
TMELand: An end-to-end pipeline for quantification and visualization of Waddington’s epigenetic landscape based on gene regulatory network
期刊论文
IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2023
作者:
Zhu, Lin
;
Kang, Xin
;
Li, Chunhe
;
Zheng, Jie
Adobe PDF(4456Kb)
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浏览/下载:285/0
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提交时间:2022/05/26
TMELand: An end-to-end Pipeline for Quantification and Visualization of Waddingtons Epigenetic Landscape based on Gene Regulatory Network
期刊论文
IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2023, 卷号: PP, 期号: 99, 页码: 1-9
作者:
Lin Zhu
;
Xin Kang
;
Chunhe Li
;
Jie Zheng
Adobe PDF(4456Kb)
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浏览/下载:282/0
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提交时间:2023/07/14
Boolean algebra
Cytology
Data visualization
Differential equations
Gene expression
Hopfield neural networks
Cell-fate
End to end
Epigenetics
Gene regulatory networks
ScRNA-seq data
State transition path
State transitions
Transition paths
Waddington epigenetic landscape
Extracting ROI-Based Contourlet Subband Energy Feature From the sMRI Image for Alzheimer’s Disease Classification
期刊论文
IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2022, 卷号: 19, 期号: 3
作者:
Jinwang Feng
;
Shao-Wu Zhang
;
Luonan Chen
Adobe PDF(1951Kb)
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浏览/下载:359/0
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提交时间:2022/07/01
Guest Editorial for the 29th International Conference on Genome Informatics (GIW 2018)
期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2020, 卷号: 17, 期号: 3, 页码: 726-727
作者:
Jie Zheng
;
Jinyan Li
;
Yun Zheng
Adobe PDF(157Kb)
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浏览/下载:261/0
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提交时间:2020/07/14
Special issues and sections
Bioinformatics
Meetings
Genomics
Computational biology
(SLMF)-M-2: Predicting Synthetic Lethality in Human Cancers via Logistic Matrix Factorization
期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2020, 卷号: 17, 期号: 3, 页码: 748-757
作者:
Yong Liu
;
Min Wu
;
Chenghao Liu
;
Xiao-Li Li
;
Jie Zheng
Adobe PDF(933Kb)
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浏览/下载:429/134
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提交时间:2020/07/14
Synthetic lethality
machine learning
logistic matrix factorization
importance weighting
human cancers
Bayesian Data Fusion of Gene Expression and Histone Modification Profiles for Inference of Gene Regulatory Network
期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2020, 卷号: 17, 期号: 2, 页码: 516-525
作者:
Haifen Chen
;
D. A. K. Maduranga
;
Piyushkumar A. Mundra
Adobe PDF(2231Kb)
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浏览/下载:718/16
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提交时间:2018/12/06
Bayes methods
Gene expression
Computational modeling
Feedback loop
DNA
Data integration
Biological system modeling
A Probabilistic Method for Estimating the Sharing of Identity by Descent for Populations with Migration
期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2016, 卷号: 13, 期号: 2, 页码: 281-290
作者:
Ni, Xumin
;
Guo, Wei
;
Yuan, Kai
;
Yang, Xiong
;
Ma, Zhiming
Adobe PDF(728Kb)
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浏览/下载:519/1
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提交时间:2017/07/04
Population genetics
identity by descent
probabilistic method
Markov process
Inferring Sequential Order of Somatic Mutations during Tumorgenesis based on Markov Chain Model
期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2015, 卷号: 12, 期号: 5, 页码: 1094-1103
作者:
Hao Kang
;
Kwang-Hyun Cho
;
Xiaohua Douglas Zhang
;
Tao Zeng
;
Luonan Chen
Adobe PDF(404Kb)
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浏览/下载:531/0
|
提交时间:2017/07/04
Mutation order
markov chain
first hitting time
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