ShanghaiTech University Knowledge Management System
| BioQueue: a novel pipeline framework to accelerate bioinformatics analysis | |
| 2017-10-15 | |
| 发表期刊 | BIOINFORMATICS
 |
| ISSN | 1367-4803 |
| 卷号 | 33期号:20页码:3286-3288 |
| 发表状态 | 已发表 |
| DOI | 10.1093/bioinformatics/btx403 |
| 摘要 | Motivation: With the rapid development of Next-Generation Sequencing, a large amount of data is now available for bioinformatics research. Meanwhile, the presence of many pipeline frameworks makes it possible to analyse these data. However, these tools concentrate mainly on their syntax and design paradigms, and dispatch jobs based on users' experience about the resources needed by the execution of a certain step in a protocol. As a result, it is difficult for these tools to maximize the potential of computing resources, and avoid errors caused by overload, such as memory overflow. |
| 收录类别 | SCI |
| 资助项目 | National Nature Science Foundation of China[81472635] ; National Nature Science Foundation of China[81672795] |
| WOS研究方向 | Biochemistry & Molecular Biology ; Biotechnology & Applied Microbiology ; Computer Science ; Mathematical & Computational Biology ; Mathematics |
| WOS类目 | Biochemical Research Methods ; Biotechnology & Applied Microbiology ; Computer Science, Interdisciplinary Applications ; Mathematical & Computational Biology ; Statistics & Probability |
| WOS记录号 | WOS:000412780100019 |
| 出版者 | OXFORD UNIV PRESS |
| 原始文献类型 | Article |
| 引用统计 | |
| 文献类型 | 期刊论文 |
| 条目标识符 | https://kms.shanghaitech.edu.cn/handle/2MSLDSTB/9919 |
| 专题 | 生命科学与技术学院 生命科学与技术学院_博士生 |
| 通讯作者 | Yao, Li; Sui, Guangchao |
| 作者单位 | 1.Northeast Forestry Univ, Coll Life Sci, Harbin 150040, Heilongjiang, Peoples R China 2.Shanghai Tech Univ, Sch Life Sci & Technol, Shanghai 200031, Peoples R China |
| 推荐引用方式 GB/T 7714 | Yao, Li,Wang, Heming,Song, Yuanyuan,et al. BioQueue: a novel pipeline framework to accelerate bioinformatics analysis[J]. BIOINFORMATICS,2017,33(20):3286-3288. |
| APA | Yao, Li,Wang, Heming,Song, Yuanyuan,&Sui, Guangchao.(2017).BioQueue: a novel pipeline framework to accelerate bioinformatics analysis.BIOINFORMATICS,33(20),3286-3288. |
| MLA | Yao, Li,et al."BioQueue: a novel pipeline framework to accelerate bioinformatics analysis".BIOINFORMATICS 33.20(2017):3286-3288. |
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