Comparison of cytosine base editors and development of the BEable-GPS database for targeting pathogenic SNVs
2019-10
发表期刊GENOME BIOLOGY
ISSN1474-760X
卷号20期号:1
发表状态已发表
DOI10.1186/s13059-019-1839-4
摘要

A variety of base editors have been developed to achieve C-to-T editing in different genomic contexts. Here, we compare a panel of five base editors on their C-to-T editing efficiencies and product purity at commonly editable sites, including some human pathogenic C-to-T mutations. We further profile the accessibilities of 20 base editors to all possible pathogenic mutations in silico. Finally, we build the BEable-GPS (Base Editable prediction of Global Pathogenic SNVs) database for users to select proper base editors to model or correct disease-related mutations. The in vivo comparison and in silico profiling catalog the availability of base editors and their broad applications in biomedical studies.

关键词Base editing Base editor CRISPR Cas Cytidine deaminase Pathogenic mutation
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收录类别SCI ; SCIE
资助项目NSFC[31730111] ; NSFC[31822016] ; NSFC[81872305] ; NSFC[31600654]
WOS研究方向Biotechnology & Applied Microbiology ; Genetics & Heredity
WOS类目Biotechnology & Applied Microbiology ; Genetics & Heredity
WOS记录号WOS:000492309200001
出版者BMC
WOS关键词DNA ; APOBEC
原始文献类型Article
引用统计
文献类型期刊论文
条目标识符https://kms.shanghaitech.edu.cn/handle/2MSLDSTB/80529
专题免疫化学研究所_特聘教授组_抗体结构学实验室
生命科学与技术学院_PI研究组_陈佳组
生命科学与技术学院_特聘教授组_杨力组
生命科学与技术学院_硕士生
生命科学与技术学院_博士生
免疫化学研究所_PI研究组_杨贝组
共同第一作者Gao, Runze; Wu, Jing
通讯作者Chen, Jia; Yang, Li
作者单位
1.Univ Chinese Acad Sci, Shanghai Inst Nutr & Hlth, Chinese Acad Sci,Shanghai Inst Biol Sci, CAS Key Lab Computat Biol,CAS MPG Partner Inst Co, Shanghai 200031, Peoples R China
2.ShanghaiTech Univ, Sch Life Sci & Technol, Shanghai 201210, Peoples R China
3.Chinese Acad Sci, CAS Ctr Excellence Mol Cell Sci, Shanghai Inst Biochem & Cell Biol, Shanghai 200031, Peoples R China
4.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
5.ShanghaiTech Univ, Shanghai Inst Adv Immunochem Studies, Shanghai 201210, Peoples R China
通讯作者单位生命科学与技术学院
推荐引用方式
GB/T 7714
Wang, Ying,Gao, Runze,Wu, Jing,et al. Comparison of cytosine base editors and development of the BEable-GPS database for targeting pathogenic SNVs[J]. GENOME BIOLOGY,2019,20(1).
APA Wang, Ying.,Gao, Runze.,Wu, Jing.,Xiong, Yi-Chun.,Wei, Jia.,...&Yang, Li.(2019).Comparison of cytosine base editors and development of the BEable-GPS database for targeting pathogenic SNVs.GENOME BIOLOGY,20(1).
MLA Wang, Ying,et al."Comparison of cytosine base editors and development of the BEable-GPS database for targeting pathogenic SNVs".GENOME BIOLOGY 20.1(2019).
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