Leveraging base excision repair for efficient adenine base editing of mitochondrial DNA
2025-03-01
发表期刊NATURE BIOTECHNOLOGY (IF:33.1[JCR-2023],56.9[5-Year])
ISSN1087-0156
EISSN1546-1696
发表状态已发表
DOI10.1038/s41587-025-02608-w
摘要

Transcription activator-like effector-linked deaminases (TALEDs) use their single-stranded DNA (ssDNA)-specific adenosine deaminase TadA8e to mediate A-to-G editing in mitochondrial DNA (mtDNA). The working mechanism of this process is unknown, hindering the development of more effective TALEDs. Here we reveal that TALED-mediated A-to-G editing relies on the formation of an ssDNA region through base excision repair (BER), which is triggered by double-stranded DNA-specific cytidine deaminase (DddA)-induced C-to-U deamination. We develop a series of enhanced TALEDs (eTALED6s) with increased editing efficiency by replacing DddA with the high-activity variant DddA6 and fusing human uracil DNA glycosylase to TadA8e. By further engineering TadA8e, the resulting eTALED6Rs induces efficient on-target editing with reduced bystander editing and off-target editing at the DNA and RNA levels. Lastly, we use eTALED6 and eTALED6R to install a pathogenic mutation in mtDNA. Revealing the mechanism of TALED-mediated A-to-G editing demonstrates that enhancing BER increases editing efficiency.

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收录类别SCI
语种英语
资助项目Ministry of Science and Technology of the People's Republic of China (Chinese Ministry of Science and Technology)[
WOS研究方向Biotechnology & Applied Microbiology
WOS类目Biotechnology & Applied Microbiology
WOS记录号WOS:001451783800001
出版者NATURE PORTFOLIO
文献类型期刊论文
条目标识符https://kms.shanghaitech.edu.cn/handle/2MSLDSTB/510447
专题生命科学与技术学院
生命科学与技术学院_PI研究组_陈佳组
免疫化学研究所
生命科学与技术学院_硕士生
生命科学与技术学院_博士生
生命科学与技术学院_本科生
免疫化学研究所_PI研究组_杨贝组
通讯作者Chen, Jia
作者单位
1.ShanghaiTech Univ, Gene Editing Ctr, Sch Life Sci & Technol, Shanghai, Peoples R China
2.Univ Chinese Acad Sci, Chinese Acad Sci, Shanghai Inst Nutr & Hlth, Shanghai, Peoples R China
3.Fudan Univ, Childrens Hosp, Ctr Mol Med, Shanghai, Peoples R China
4.Fudan Univ, Inst Biomed Sci, Shanghai Key Lab Med Epigenet, Int Lab Med Epigenet & Metab,Minist Sci & Technol, Shanghai, Peoples R China
5.ShanghaiTech Univ, Shanghai Inst Adv Immunochem Studies, Shanghai, Peoples R China
6.Shanghai Clin Res & Trial Ctr, Shanghai, Peoples R China
第一作者单位生命科学与技术学院
通讯作者单位生命科学与技术学院
第一作者的第一单位生命科学与技术学院
推荐引用方式
GB/T 7714
Fan, Yuhang,Xu, Wenchao,Gao, Bao-Qing,et al. Leveraging base excision repair for efficient adenine base editing of mitochondrial DNA[J]. NATURE BIOTECHNOLOGY,2025.
APA Fan, Yuhang.,Xu, Wenchao.,Gao, Bao-Qing.,Qin, Huichao.,Wu, Xiaoyi.,...&Chen, Jia.(2025).Leveraging base excision repair for efficient adenine base editing of mitochondrial DNA.NATURE BIOTECHNOLOGY.
MLA Fan, Yuhang,et al."Leveraging base excision repair for efficient adenine base editing of mitochondrial DNA".NATURE BIOTECHNOLOGY (2025).
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