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Leveraging base excision repair for efficient adenine base editing of mitochondrial DNA | |
2025-03-01 | |
发表期刊 | NATURE BIOTECHNOLOGY (IF:33.1[JCR-2023],56.9[5-Year]) |
ISSN | 1087-0156 |
EISSN | 1546-1696 |
发表状态 | 已发表 |
DOI | 10.1038/s41587-025-02608-w |
摘要 | Transcription activator-like effector-linked deaminases (TALEDs) use their single-stranded DNA (ssDNA)-specific adenosine deaminase TadA8e to mediate A-to-G editing in mitochondrial DNA (mtDNA). The working mechanism of this process is unknown, hindering the development of more effective TALEDs. Here we reveal that TALED-mediated A-to-G editing relies on the formation of an ssDNA region through base excision repair (BER), which is triggered by double-stranded DNA-specific cytidine deaminase (DddA)-induced C-to-U deamination. We develop a series of enhanced TALEDs (eTALED6s) with increased editing efficiency by replacing DddA with the high-activity variant DddA6 and fusing human uracil DNA glycosylase to TadA8e. By further engineering TadA8e, the resulting eTALED6Rs induces efficient on-target editing with reduced bystander editing and off-target editing at the DNA and RNA levels. Lastly, we use eTALED6 and eTALED6R to install a pathogenic mutation in mtDNA. Revealing the mechanism of TALED-mediated A-to-G editing demonstrates that enhancing BER increases editing efficiency. |
URL | 查看原文 |
收录类别 | SCI |
语种 | 英语 |
资助项目 | Ministry of Science and Technology of the People's Republic of China (Chinese Ministry of Science and Technology)[ |
WOS研究方向 | Biotechnology & Applied Microbiology |
WOS类目 | Biotechnology & Applied Microbiology |
WOS记录号 | WOS:001451783800001 |
出版者 | NATURE PORTFOLIO |
文献类型 | 期刊论文 |
条目标识符 | https://kms.shanghaitech.edu.cn/handle/2MSLDSTB/510447 |
专题 | 生命科学与技术学院 生命科学与技术学院_PI研究组_陈佳组 免疫化学研究所 生命科学与技术学院_硕士生 生命科学与技术学院_博士生 生命科学与技术学院_本科生 免疫化学研究所_PI研究组_杨贝组 |
通讯作者 | Chen, Jia |
作者单位 | 1.ShanghaiTech Univ, Gene Editing Ctr, Sch Life Sci & Technol, Shanghai, Peoples R China 2.Univ Chinese Acad Sci, Chinese Acad Sci, Shanghai Inst Nutr & Hlth, Shanghai, Peoples R China 3.Fudan Univ, Childrens Hosp, Ctr Mol Med, Shanghai, Peoples R China 4.Fudan Univ, Inst Biomed Sci, Shanghai Key Lab Med Epigenet, Int Lab Med Epigenet & Metab,Minist Sci & Technol, Shanghai, Peoples R China 5.ShanghaiTech Univ, Shanghai Inst Adv Immunochem Studies, Shanghai, Peoples R China 6.Shanghai Clin Res & Trial Ctr, Shanghai, Peoples R China |
第一作者单位 | 生命科学与技术学院 |
通讯作者单位 | 生命科学与技术学院 |
第一作者的第一单位 | 生命科学与技术学院 |
推荐引用方式 GB/T 7714 | Fan, Yuhang,Xu, Wenchao,Gao, Bao-Qing,et al. Leveraging base excision repair for efficient adenine base editing of mitochondrial DNA[J]. NATURE BIOTECHNOLOGY,2025. |
APA | Fan, Yuhang.,Xu, Wenchao.,Gao, Bao-Qing.,Qin, Huichao.,Wu, Xiaoyi.,...&Chen, Jia.(2025).Leveraging base excision repair for efficient adenine base editing of mitochondrial DNA.NATURE BIOTECHNOLOGY. |
MLA | Fan, Yuhang,et al."Leveraging base excision repair for efficient adenine base editing of mitochondrial DNA".NATURE BIOTECHNOLOGY (2025). |
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