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ShanghaiTech University Knowledge Management System
Deep learning-based perfusion quantification and macroscopic vessel exclusion for renal arterial spin labeling MRI | |
2025 | |
发表期刊 | MAGNETIC RESONANCE IMAGING (IF:2.1[JCR-2023],2.3[5-Year]) |
ISSN | 0730-725X |
发表状态 | 已投递待接收 |
摘要 | In arterial spin labeling (ASL), the flow-sensitive alternating inversion recovery (FAIR) sequence with multi-TI acquisition enables accurate renal perfusion measurement. However, perfusion quantification from ASL signals remains challenging due to the low signal-to-noise ratio (SNR) and its inherent inverse problem. Traditional method for quantification relies on two model-fitting steps. In this study, we propose a BiLSTM-based deep learning (DL) approach trained on simulated pixel-wise ASL signals for simultaneous perfusion quantification and macroscopic vessel exclusion. The network features two decoders for two tasks, with one estimating perfusion along with bolus arrival time (BAT) and bolus length (BL). Compared to the traditional method, the DL method demonstrated superior noise robustness. In simulation experiments, for cortex data with noise standard deviation (STD) of 2% times the mean control signal intensity (or noise level of 2%), the DL method had normalized error of -0.10±0.18, significantly lower than the traditional method’s 0.56±0.56 (P<0.001). For medulla data, the normalized error was 1.07±1.68 (DL) versus 5.19±3.20 (traditional, P<0.001). In in vivo experiments on 16 kidneys from 8 human subjects, similar trends were observed, with DL showing lower normalized error for both renal cortex (0.20±0.48 vs. 0.27±0.50, P<0.001) and medulla (0.29±0.64 vs. 0.58±1.29, P<0.001) at noise level of 2%. The DL-excluded macroscopic vessels closely matched manual exclusion, with intersection over union (IoU) of 80%±6% across 16 kidneys. Perfusion maps estimated by both DL and traditional methods, showed a significant decrease in mean perfusion after DL exclusion (P<0.001). Additionally, BAT and BL quantification were comparable between both DL and traditional methods. In conclusion, the proposed DL method quantified renal perfusion with excellent noise robustness while effectively excluding macroscopic vessels to remove abnormal perfusion values. Along with the perfusion quantification, the DL method also demonstrated its feasibility in BAT and BL quantification. |
关键词 | magnetic resonance imaging arterial spin labeling renal perfusion deep learning |
文献类型 | 期刊论文 |
条目标识符 | https://kms.shanghaitech.edu.cn/handle/2MSLDSTB/496993 |
专题 | 生物医学工程学院 信息科学与技术学院_硕士生 生物医学工程学院_PI研究组_张雷组(生医工) 生物医学工程学院_PI研究组_宗小鹏组 |
通讯作者 | Zong, Xiao peng |
作者单位 | 1.School of Biomedical Engineering, ShanghaiTech University, Shanghai, China 2.Central Research Institute, Shanghai United Imaging Healthcare Co Ltd, Shanghai, China |
第一作者单位 | 生物医学工程学院 |
通讯作者单位 | 生物医学工程学院 |
第一作者的第一单位 | 生物医学工程学院 |
推荐引用方式 GB/T 7714 | Zhang, Jiaying,Kong, Xiangwei,Lin, Xi,et al. Deep learning-based perfusion quantification and macroscopic vessel exclusion for renal arterial spin labeling MRI[J]. MAGNETIC RESONANCE IMAGING,2025. |
APA | Zhang, Jiaying,Kong, Xiangwei,Lin, Xi,Li, Yanbin,Zhang, Jeff Lei,&Zong, Xiao peng.(2025).Deep learning-based perfusion quantification and macroscopic vessel exclusion for renal arterial spin labeling MRI.MAGNETIC RESONANCE IMAGING. |
MLA | Zhang, Jiaying,et al."Deep learning-based perfusion quantification and macroscopic vessel exclusion for renal arterial spin labeling MRI".MAGNETIC RESONANCE IMAGING (2025). |
条目包含的文件 | ||||||
文件名称/大小 | 文献类型 | 版本类型 | 开放类型 | 使用许可 | ||
manuscript_v4.0.docx(2246KB) | 期刊论文 | 作者接受稿 | 限制开放 | CC BY-NC-SA | 请求全文 |
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