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Identification of novel tau positron emission tomography tracers for chronic traumatic encephalopathy by comprehensive in silico screening and molecular dynamics simulation
2024
发表期刊PHYSICAL CHEMISTRY CHEMICAL PHYSICS (IF:2.9[JCR-2023],3.0[5-Year])
ISSN1463-9076
发表状态已发表
DOI10.1039/d4cp03207a
摘要

Chronic traumatic encephalopathy (CTE), a neurodegenerative disease associated with repetitive mild traumatic brain injury, is characterized neuropathologically by abnormal hyperphosphorylated tau accumulation. Early detection of tau deposition in the brain is crucial for the prevention and evaluation of CTE. Positron emission tomography (PET) tracers can image specific proteins, while the optimal PET tracer for CTE tau fibrils remains unidentified. In this study, structure-based virtual screening and CNS PET MPO algorithms were utilized to identify candidates for novel tau PET tracers from 23 000 compounds in the ChemDiv CNS BBB library. A total of 8 μs molecular dynamics simulations were then employed to evaluate their binding affinity and atomic-level interaction with CTE tau protofibrils. The results indicate that V017-7820 (CNS-4), S776-0061 (CNS-12), S567-0465 (CNS-18), and T828-0465 (CNS-25) exhibit higher docking scores and binding free energies with CTE tau protofibrils while also satisfying the fundamental physicochemical properties of PET tracers. Further simulation analyses reveal that CNS-4 has the strongest binding affinity to tau protofibrils among the four compounds. Hydrophobic, π-π stacking, and hydrogen bonding interactions are the primary driving forces for the binding of these compounds to CTE tau protofibrils. In particular, CNS-12 and CNS-25 exhibit more intense hydrophobic and π-π stacking interactions, whereas CNS-4 and CNS-25 exhibit stronger hydrogen bonding interactions. This study identifies promising lead compounds for tau PET tracers and highlights their mechanism of binding to CTE tau protofibrils, which provides new insights for further screening and development of novel PET tracers for CTE diagnosis. © 2024 The Royal Society of Chemistry.

关键词Binding energy Computerized tomography Germanium compounds Neurodegenerative diseases Neurophysiology Photons Positron emission tomography Positrons Binding affinities Dynamics simulation Emission tomography Hydrogen bonding interactions Hydrophobics In-silico screening Mild traumatic brain injuries Neurodegenerative Positron emission Protofibrils
收录类别EI
语种英语
出版者Royal Society of Chemistry
EI入藏号20245117538399
EI主题词Hydrogen bonds
EI分类号102.1 ; 102.1.2 ; 1301.1.3 ; 1301.2.1 ; 746 Imaging Techniques ; 801.3 Colloid Chemistry ; 804.2 Inorganic Compounds
原始文献类型Article in Press
文献类型期刊论文
条目标识符https://kms.shanghaitech.edu.cn/handle/2MSLDSTB/461514
专题生命科学与技术学院
生命科学与技术学院_本科生
通讯作者Zou, Yu
作者单位
1.Department of Sport and Exercise Science, College of Education, Zhejiang University, Zhejiang, Hangzhou; 310058, China;
2.School of Life Science and Technology, ShanghaiTech University, Shanghai; 201210, China;
3.Department of Physics, Ningbo University, Zhejiang, Ningbo; 315211, China;
4.College of Physical Education and Training, Shanghai University of Sport, Shanghai; 200438, China
推荐引用方式
GB/T 7714
Qi, Bote,Guan, Lulu,Tan, Jingwang,et al. Identification of novel tau positron emission tomography tracers for chronic traumatic encephalopathy by comprehensive in silico screening and molecular dynamics simulation[J]. PHYSICAL CHEMISTRY CHEMICAL PHYSICS,2024.
APA Qi, Bote.,Guan, Lulu.,Tan, Jingwang.,Li, Gengchen.,Sun, Yunxiang.,...&Zou, Yu.(2024).Identification of novel tau positron emission tomography tracers for chronic traumatic encephalopathy by comprehensive in silico screening and molecular dynamics simulation.PHYSICAL CHEMISTRY CHEMICAL PHYSICS.
MLA Qi, Bote,et al."Identification of novel tau positron emission tomography tracers for chronic traumatic encephalopathy by comprehensive in silico screening and molecular dynamics simulation".PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2024).
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