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Weakly supervised learning for pattern classification in serial femtosecond crystallography
2023-09-25
发表期刊OPTICS EXPRESS (IF:3.2[JCR-2023],3.4[5-Year])
ISSN1094-4087
EISSN1094-4087
卷号31期号:20页码:32909-32924
发表状态已发表
DOI10.1364/OE.492311
摘要

Serial femtosecond crystallography at X-ray free electron laser facilities opens a new era for the determination of crystal structure. However, the data processing of those experiments is facing unprecedented challenge, because the total number of diffraction patterns needed to determinate a high-resolution structure is huge. Machine learning methods are very likely to play important roles in dealing with such a large volume of data. Convolutional neural networks have made a great success in the field of pattern classification, however, training of the networks need very large datasets with labels. This heavy dependence on labeled datasets will seriously restrict the application of networks, because it is very costly to annotate a large number of diffraction patterns. In this article we present our job on the classification of diffraction pattern by weakly supervised algorithms, with the aim of reducing as much as possible the size of the labeled dataset required for training. Our result shows that weakly supervised methods can significantly reduce the need for the number of labeled patterns while achieving comparable accuracy to fully supervised methods. © 2023 Optica Publishing Group under the terms of the Optica Open Access Publishing Agreement.

关键词Classification (of information) Crystal structure Data handling Diffraction patterns Electrons Free electron lasers Interferometry Supervised learning X ray crystallography Crystals structures High-resolution structures Labeled dataset Laser facilities Machine learning methods Patterns classification Serial femtosecond crystallographies Supervised methods Weakly supervised learning X-ray free electron lasers
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收录类别EI ; SCI
语种英语
资助项目Strategic Priority Research Program of Chinese Academy of Sciences[XDC02070100]
WOS研究方向Optics
WOS类目Computer Science, Artificial Intelligence ; Physics, Condensed Matter
WOS记录号PPRN:84952064
出版者Optica Publishing Group (formerly OSA)
EI入藏号20234214926590
EI主题词Large dataset
EI分类号716.1 Information Theory and Signal Processing ; 723.2 Data Processing and Image Processing ; 744.5 Free Electron Lasers ; 903.1 Information Sources and Analysis ; 933.1.1 Crystal Lattice ; 941.4 Optical Variables Measurements
原始文献类型Journal article (JA)
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文献类型期刊论文
条目标识符https://kms.shanghaitech.edu.cn/handle/2MSLDSTB/348661
专题物质科学与技术学院
信息科学与技术学院
物质科学与技术学院_硕士生
信息科学与技术学院_硕士生
信息科学与技术学院_PI研究组_郑杰组
大科学中心_公共科研平台_大科学装置建设部
通讯作者Zhang, Xiaofeng
作者单位
1.School of Physical Science and Technology, ShanghaiTech University, 393 Middle Huaxia Road, Shanghai; 201210, China
2.Shanghai Advanced Research Institute, Chinese Academy of Sciences, 99 Haike Road, Shanghai; 201210, China
3.School of Information Science and Technology, ShanghaiTech University, Shanghai; 201210, China
4.University of Chinese, Academy of Sciences, Beijing; 100049, China
5.Center for Transformative Science, ShanghaiTech University, 393 Middle Huaxia Road, Shanghai; 201210, China
6.ShanghaiTech-SARI Joint Lab for Photon Science, Shanghai Advanced Research Institute, Chinese Academy of Sciences, 99 Haike Road, Shanghai; 201210, China
7.Shanghai Engineering Research Center of Intelligent Vision and Imaging, Shanghai; 201210, China
第一作者单位物质科学与技术学院
通讯作者单位上海科技大学
第一作者的第一单位物质科学与技术学院
推荐引用方式
GB/T 7714
Xie, Jianan,Liu, Ji,Zhang, Chi,et al. Weakly supervised learning for pattern classification in serial femtosecond crystallography[J]. OPTICS EXPRESS,2023,31(20):32909-32924.
APA Xie, Jianan.,Liu, Ji.,Zhang, Chi.,Chen, Xihui.,Huai, Ping.,...&Zhang, Xiaofeng.(2023).Weakly supervised learning for pattern classification in serial femtosecond crystallography.OPTICS EXPRESS,31(20),32909-32924.
MLA Xie, Jianan,et al."Weakly supervised learning for pattern classification in serial femtosecond crystallography".OPTICS EXPRESS 31.20(2023):32909-32924.
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