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ShanghaiTech University Knowledge Management System
Weakly supervised learning for pattern classification in serial femtosecond crystallography | |
2023-09-25 | |
发表期刊 | OPTICS EXPRESS (IF:3.2[JCR-2023],3.4[5-Year]) |
ISSN | 1094-4087 |
EISSN | 1094-4087 |
卷号 | 31期号:20页码:32909-32924 |
发表状态 | 已发表 |
DOI | 10.1364/OE.492311 |
摘要 | Serial femtosecond crystallography at X-ray free electron laser facilities opens a new era for the determination of crystal structure. However, the data processing of those experiments is facing unprecedented challenge, because the total number of diffraction patterns needed to determinate a high-resolution structure is huge. Machine learning methods are very likely to play important roles in dealing with such a large volume of data. Convolutional neural networks have made a great success in the field of pattern classification, however, training of the networks need very large datasets with labels. This heavy dependence on labeled datasets will seriously restrict the application of networks, because it is very costly to annotate a large number of diffraction patterns. In this article we present our job on the classification of diffraction pattern by weakly supervised algorithms, with the aim of reducing as much as possible the size of the labeled dataset required for training. Our result shows that weakly supervised methods can significantly reduce the need for the number of labeled patterns while achieving comparable accuracy to fully supervised methods. © 2023 Optica Publishing Group under the terms of the Optica Open Access Publishing Agreement. |
关键词 | Classification (of information) Crystal structure Data handling Diffraction patterns Electrons Free electron lasers Interferometry Supervised learning X ray crystallography Crystals structures High-resolution structures Labeled dataset Laser facilities Machine learning methods Patterns classification Serial femtosecond crystallographies Supervised methods Weakly supervised learning X-ray free electron lasers |
URL | 查看原文 |
收录类别 | EI ; SCI |
语种 | 英语 |
资助项目 | Strategic Priority Research Program of Chinese Academy of Sciences[XDC02070100] |
WOS研究方向 | Optics |
WOS类目 | Computer Science, Artificial Intelligence ; Physics, Condensed Matter |
WOS记录号 | PPRN:84952064 |
出版者 | Optica Publishing Group (formerly OSA) |
EI入藏号 | 20234214926590 |
EI主题词 | Large dataset |
EI分类号 | 716.1 Information Theory and Signal Processing ; 723.2 Data Processing and Image Processing ; 744.5 Free Electron Lasers ; 903.1 Information Sources and Analysis ; 933.1.1 Crystal Lattice ; 941.4 Optical Variables Measurements |
原始文献类型 | Journal article (JA) |
引用统计 | 正在获取...
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文献类型 | 期刊论文 |
条目标识符 | https://kms.shanghaitech.edu.cn/handle/2MSLDSTB/348661 |
专题 | 物质科学与技术学院 信息科学与技术学院 物质科学与技术学院_硕士生 信息科学与技术学院_硕士生 信息科学与技术学院_PI研究组_郑杰组 大科学中心_公共科研平台_大科学装置建设部 |
通讯作者 | Zhang, Xiaofeng |
作者单位 | 1.School of Physical Science and Technology, ShanghaiTech University, 393 Middle Huaxia Road, Shanghai; 201210, China 2.Shanghai Advanced Research Institute, Chinese Academy of Sciences, 99 Haike Road, Shanghai; 201210, China 3.School of Information Science and Technology, ShanghaiTech University, Shanghai; 201210, China 4.University of Chinese, Academy of Sciences, Beijing; 100049, China 5.Center for Transformative Science, ShanghaiTech University, 393 Middle Huaxia Road, Shanghai; 201210, China 6.ShanghaiTech-SARI Joint Lab for Photon Science, Shanghai Advanced Research Institute, Chinese Academy of Sciences, 99 Haike Road, Shanghai; 201210, China 7.Shanghai Engineering Research Center of Intelligent Vision and Imaging, Shanghai; 201210, China |
第一作者单位 | 物质科学与技术学院 |
通讯作者单位 | 上海科技大学 |
第一作者的第一单位 | 物质科学与技术学院 |
推荐引用方式 GB/T 7714 | Xie, Jianan,Liu, Ji,Zhang, Chi,et al. Weakly supervised learning for pattern classification in serial femtosecond crystallography[J]. OPTICS EXPRESS,2023,31(20):32909-32924. |
APA | Xie, Jianan.,Liu, Ji.,Zhang, Chi.,Chen, Xihui.,Huai, Ping.,...&Zhang, Xiaofeng.(2023).Weakly supervised learning for pattern classification in serial femtosecond crystallography.OPTICS EXPRESS,31(20),32909-32924. |
MLA | Xie, Jianan,et al."Weakly supervised learning for pattern classification in serial femtosecond crystallography".OPTICS EXPRESS 31.20(2023):32909-32924. |
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