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Adenine base editor–mediated splicing remodeling activates noncanonical splice sites
2023-12
发表期刊JOURNAL OF BIOLOGICAL CHEMISTRY (IF:4.0[JCR-2023],4.4[5-Year])
ISSN0021-9258
EISSN1083-351X
卷号299期号:12
发表状态已发表
DOI10.1016/j.jbc.2023.105442
摘要

Adenine base editors (ABEs) are genome-editing tools that have been harnessed to introduce precise A•T to G•C conversion. The discovery of split genes revealed that all introns contain two highly conserved dinucleotides, canonical "AG" (acceptor) and "GT" (donor) splice sites. ABE can directly edit splice acceptor sites of the adenine (A) base, leading to aberrant gene splicing, which may be further adopted to remodel splicing. However, spliced isoforms triggered with ABE have not been well explored. To address it, we initially generated a cell line harboring C-terminal enhanced GFP (eGFP)–tagged β-actin (ACTB), in which the eGFP signal can track endogenous β-actin expression. Expectedly, after the editing of splice acceptor sites, we observed a dramatical decrease in the percentage of eGFP-positive cells and generation of splicing products with the noncanonical splice site. Furthermore, we manipulated Peroxidasin in mouse embryos with ABE, in which a noncanonical acceptor was activated to remodel splicing, successfully generating a mouse disease model of anophthalmia and severely malformed microphthalmia. Collectively, we demonstrate that ABE-mediated splicing remodeling can activate a noncanonical acceptor to manipulate human and mouse genomes, which will facilitate the investigation of basic and translational medicine studies. © 2023 The Authors

关键词Cell culture Proteins Acceptor sites Adenine base editor Dinucleotides Editing tools Enhanced GFP Gene editing Gene splicing Noncanonical acceptor Splice site Splicing acceptor
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收录类别EI ; SCI
语种英语
资助项目Natural Science Foundation of China[82271910] ; Research Team for Reproduction Health and Translational Medicine of Hunan Normal University[2023JC101]
WOS研究方向Biochemistry & Molecular Biology
WOS类目Biochemistry & Molecular Biology
WOS记录号WOS:001164975000001
出版者American Society for Biochemistry and Molecular Biology Inc.
EI入藏号20234915153341
EI主题词Genes
EI分类号461.2 Biological Materials and Tissue Engineering ; 804.1 Organic Compounds
原始文献类型Journal article (JA)
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文献类型期刊论文
条目标识符https://kms.shanghaitech.edu.cn/handle/2MSLDSTB/347921
专题生命科学与技术学院
生命科学与技术学院_特聘教授组_李劲松组
生命科学与技术学院_博士生
通讯作者Liu, Yong; Gu, Feng
作者单位
1.Wenzhou Med Univ, Eye Hosp, Sch Ophthalmol & Optometry, State Key Lab, Wenzhou, Zhejiang, Peoples R China
2.Minist Hlth, Key Lab Vis Sci, Wenzhou, Zhejiang, Peoples R China
3.Zhejiang Prov Key Lab Ophthalmol & Optometry, Wenzhou, Zhejiang, Peoples R China
4.Hunan Normal Univ, Engn Res Ctr Reprod & Translat Med Hunan Prov, Sch Med, Key Lab Model Anim & Stem Cell Biol Hunan Prov, Changsha, Peoples R China
5.Chinese Acad Sci, Shanghai Inst Biochem & Cell Biol, Ctr Excellence Mol Cell Sci, Shanghai Key Lab Mol Androl,State Key Lab Cell Bio, Shanghai, Peoples R China
6.Shanghai Tech Univ, Sch Life Sci & Technol, Shanghai, Peoples R China
7.Zhejiang Chinese Med Univ, Sch Nursing, Hangzhou, Zhejiang, Peoples R China
8.Hong Kong Polytech Univ, Sch Optometry, Hong Kong, Peoples R China
9.Reprod & Genet Hosp CITIC Xiangya, Clin Res Ctr Reprod & Genet Hunan Prov, Changsha, Peoples R China
10.Cent South Univ, Inst Reprod & Stem Cell Engn, Sch Basic Med Sci, Changsha, Peoples R China
11.Hunan Normal Univ, Hunan Guangxiu Hosp, Guangxiu Hosp, Changsha, Peoples R China
推荐引用方式
GB/T 7714
Liu, Yuanyuan,Li, Qing,Yan, Tong,et al. Adenine base editor–mediated splicing remodeling activates noncanonical splice sites[J]. JOURNAL OF BIOLOGICAL CHEMISTRY,2023,299(12).
APA Liu, Yuanyuan.,Li, Qing.,Yan, Tong.,Chen, Haoran.,Wang, Jiahua.,...&Gu, Feng.(2023).Adenine base editor–mediated splicing remodeling activates noncanonical splice sites.JOURNAL OF BIOLOGICAL CHEMISTRY,299(12).
MLA Liu, Yuanyuan,et al."Adenine base editor–mediated splicing remodeling activates noncanonical splice sites".JOURNAL OF BIOLOGICAL CHEMISTRY 299.12(2023).
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