A-GCL: Adversarial graph contrastive learning for fMRI analysis to diagnose neurodevelopmental disorders
2023-12
发表期刊MEDICAL IMAGE ANALYSIS (IF:10.7[JCR-2023],11.9[5-Year])
ISSN1361-8415
EISSN1361-8423
卷号90
发表状态已发表
DOI10.1016/j.media.2023.102932
摘要

Accurate diagnosis of neurodevelopmental disorders is a challenging task due to the time-consuming cognitive tests and potential human bias in clinics. To address this challenge, we propose a novel adversarial self-supervised graph neural network (GNN) based on graph contrastive learning, named A-GCL, for diagnosing neurodevelopmental disorders using functional magnetic resonance imaging (fMRI) data. Taking advantage of the success of GNNs in psychiatric disease diagnosis using fMRI, our proposed A-GCL model is expected to improve the performance of diagnosis and provide more robust results. A-GCL takes graphs constructed from the fMRI images as input and uses contrastive learning to extract features for classification. The graphs are constructed with 3 bands of the amplitude of low-frequency fluctuation (ALFF) as node features and Pearson's correlation coefficients (PCC) of the average fMRI time series in different brain regions as edge weights. The contrastive learning creates an edge-dropped graph from a trainable Bernoulli mask to extract features that are invariant to small variations of the graph. Experiment results on three datasets — Autism Brain Imaging Data Exchange (ABIDE) I, ABIDE II, and attention deficit hyperactivity disorder (ADHD) — with 3 atlases — AAL1, AAL3, Shen268 — demonstrate the superiority and generalizability of A-GCL compared to the other GNN-based models. Extensive ablation studies verify the robustness of the proposed approach to atlas selection and model variation. Explanatory results reveal key functional connections and brain regions associated with neurodevelopmental disorders. © 2023 Elsevier B.V.

关键词Brain Brain mapping Correlation methods Diagnosis Diseases Electronic data interchange Graph neural networks Adversarial graph contrastive learning Brain regions Brain-imaging data Cognitive tests Functional magnetic resonance imaging Functional magnetic resonance imaging analyse Graph neural networks Human bias Imaging analysis Neurodevelopmental disorder
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收录类别EI ; SCI
语种英语
资助项目National Natu-ral Science Foundation of China["82171903","92043301"] ; Shanghai Science and Technology Committee[20ZR1407800] ; Shanghai Municipal Science and Technology Major Project[2018SHZDZX01]
WOS研究方向Computer Science ; Engineering ; Radiology, Nuclear Medicine & Medical Imaging
WOS类目Computer Science, Artificial Intelligence ; Computer Science, Interdisciplinary Applications ; Engineering, Biomedical ; Radiology, Nuclear Medicine & Medical Imaging
WOS记录号WOS:001073712400001
出版者Elsevier B.V.
EI入藏号20233614689067
EI主题词Magnetic resonance imaging
EI分类号461.1 Biomedical Engineering ; 461.6 Medicine and Pharmacology ; 701.2 Magnetism: Basic Concepts and Phenomena ; 723.2 Data Processing and Image Processing ; 723.4 Artificial Intelligence ; 746 Imaging Techniques ; 922.2 Mathematical Statistics
原始文献类型Journal article (JA)
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文献类型期刊论文
条目标识符https://kms.shanghaitech.edu.cn/handle/2MSLDSTB/329002
专题生物医学工程学院
生物医学工程学院_PI研究组_沈定刚组
通讯作者Zhou, Yuan; Zhang, Xiao-Yong
作者单位
1.Fudan Univ, Inst Sci & Technol Brain Inspired Intelligence, Shanghai 200433, Peoples R China
2.Fudan Univ, MOE Key Lab Computat Neurosci & Brain Inspired Int, Shanghai 200433, Peoples R China
3.Fudan Univ, MOE Frontiers Ctr Brain, Shanghai 200433, Peoples R China
4.Beijing Normal Univ, Dept Math, Beijing 100032, Peoples R China
5.Beihang Univ, Dept Sch Cyber Sci & Technol, Beijing 100191, Peoples R China
6.Univ Elect Sci & Technol China, Clin Hosp, Sch Life Sci & Technol, MOE Key Lab Neuroinformat,Chengdu Brain Sci Inst, Chengdu 611731, Peoples R China
7.ShanghaiTech Univ, Sch Biomed Engn, Shanghai 201210, Peoples R China
8.Shanghai United Imaging Intelligence Co Ltd, Shanghai 200030, Peoples R China
9.Shanghai Clin Res & Trial Ctr, Shanghai 201210, Peoples R China
10.Fudan Univ, Sch Data Sci, Shanghai 200433, Peoples R China
推荐引用方式
GB/T 7714
Zhang, Shengjie,Chen, Xiang,Shen, Xin,et al. A-GCL: Adversarial graph contrastive learning for fMRI analysis to diagnose neurodevelopmental disorders[J]. MEDICAL IMAGE ANALYSIS,2023,90.
APA Zhang, Shengjie.,Chen, Xiang.,Shen, Xin.,Ren, Bohan.,Yu, Ziqi.,...&Zhang, Xiao-Yong.(2023).A-GCL: Adversarial graph contrastive learning for fMRI analysis to diagnose neurodevelopmental disorders.MEDICAL IMAGE ANALYSIS,90.
MLA Zhang, Shengjie,et al."A-GCL: Adversarial graph contrastive learning for fMRI analysis to diagnose neurodevelopmental disorders".MEDICAL IMAGE ANALYSIS 90(2023).
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