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Quantum molecular dynamics simulations of the effect of secondary modes on the photoisomerization of a retinal chromophore model | |
2023-07-01 | |
发表期刊 | EUROPEAN PHYSICAL JOURNAL-SPECIAL TOPICS (IF:2.6[JCR-2023],2.5[5-Year]) |
ISSN | 1951-6355 |
EISSN | 1951-6401 |
发表状态 | 已发表 |
DOI | 10.1140/epjs/s11734-023-00923-4 |
摘要 | In this paper, we report on the performance of various quantum molecular dynamics simulation methods in describing the photo-induced nonadiabatic dynamics underlying the isomerization process of the retinal chromophore in rhodopsin. We focus on purely quantum vibronic wavepacket techniques and on various trajectory-based schemes, discussing their capability of accurately capture the isomerization process using a two-dimensional two-state model system coupled to an environment of secondary harmonic modes. Numerical results of various algorithms and time-independent grid schemes for the purely quantum approaches are presented, which also serve as benchmark for the trajectory-based calculations. Independent-trajectory and coupled-trajectory methods are compared as well, devoting particular attention to the scaling of their computational cost when increasing the number of degrees of freedom. |
URL | 查看原文 |
收录类别 | SCI |
语种 | 英语 |
资助项目 | French Agence Nationale de la Recherche[ANR-20-CE29-0014] |
WOS研究方向 | Physics |
WOS类目 | Physics, Multidisciplinary |
WOS记录号 | WOS:001038577000002 |
出版者 | SPRINGER HEIDELBERG |
引用统计 | 正在获取...
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文献类型 | 期刊论文 |
条目标识符 | https://kms.shanghaitech.edu.cn/handle/2MSLDSTB/321452 |
专题 | 大科学中心_PI研究组_江玉海组 |
通讯作者 | Lauvergnat, David; Agostini, Federica |
作者单位 | 1.Univ Paris Saclay, Inst Chim Phys, CNRS, UMR CNRS 8000, F-91405 Orsay, France 2.Birla Inst Technol & Sci Pilani, Dept Chem, K K Birla Goa Campus, Pilani 403726, Goa, India 3.ShanghaiTech Univ, Ctr Transformat Sci, Shanghai 201210, Peoples R China |
推荐引用方式 GB/T 7714 | Pereira, Ari,Knapik, Joachim,Chen, Ahai,et al. Quantum molecular dynamics simulations of the effect of secondary modes on the photoisomerization of a retinal chromophore model[J]. EUROPEAN PHYSICAL JOURNAL-SPECIAL TOPICS,2023. |
APA | Pereira, Ari,Knapik, Joachim,Chen, Ahai,Lauvergnat, David,&Agostini, Federica.(2023).Quantum molecular dynamics simulations of the effect of secondary modes on the photoisomerization of a retinal chromophore model.EUROPEAN PHYSICAL JOURNAL-SPECIAL TOPICS. |
MLA | Pereira, Ari,et al."Quantum molecular dynamics simulations of the effect of secondary modes on the photoisomerization of a retinal chromophore model".EUROPEAN PHYSICAL JOURNAL-SPECIAL TOPICS (2023). |
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