Joint selection of brain network nodes and edges for MCI identification
2022-10
发表期刊COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE (IF:4.9[JCR-2023],5.5[5-Year])
ISSN0169-2607
EISSN1872-7565
卷号225
发表状态已发表
DOI10.1016/j.cmpb.2022.107082
摘要

Background and Objective: Functional brain graph (FBG), by describing the interactions between different brain regions, provides an effective representation of fMRI data for identifying mild cognitive impairment (MCI), an early stage of Alzheimer's Disease (AD). Prior to the identification task, selecting features from the estimated FBG is a necessary step for reducing computational cost, alleviating the risk of overfitting, and finding potential biomarkers of brain diseases. In practice, either node-based features (e.g., local clustering coefficients) or edge-based features (e.g., adjacency weights) are generally considered in current studies. Despite their popularity, these schemes can only capture one granularity (node or edge) of information in the FBG, which might be insufficient for the classification task and the interpretation of the classification result. Methods: To address this issue, in this paper, we propose to jointly select nodes and edges from the estimated FBGs. Specifically, we first assign the edges to different node groups. Then, sparse group least absolute shrinkage and selection operator (sgLASSO) is used to select groups (nodes) and edges in the groups towards a better classification performance. Such a technique enables us to simultaneously locate discriminative brain regions, as well as connections between these brain regions, making the classification results more interpretable. Results: Experimental results show that the proposed method achieves better classification performance than state-of-the-art methods. Moreover, by exploring brain network "features" that contributed most to MCI identification, we discover potential biomarkers for MCI diagnosis. Conclusion: A novel method for jointly selecting nodes and edges from the estimated functional brain graphs (FBGs) is proposed. © 2022

关键词Biomarkers Classification (of information) Diagnosis Feature Selection Graph theory Neurodegenerative diseases Risk perception Brain networks Brain regions Cognitive impairment Edge-based methods Features selection Functional brain graph Mild cognitive impairment identification Node-based Node-based method Sparse group LASSO
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收录类别SCI ; SCIE ; EI
语种英语
资助项目National Natural Science Foundation of China[
WOS研究方向Computer Science ; Engineering ; Medical Informatics
WOS类目Computer Science, Interdisciplinary Applications ; Computer Science, Theory & Methods ; Engineering, Biomedical ; Medical Informatics
WOS记录号WOS:000863215400006
出版者Elsevier Ireland Ltd
EI入藏号20223912785812
EI主题词Brain
EI分类号461.1 Biomedical Engineering ; 461.6 Medicine and Pharmacology ; 716.1 Information Theory and Signal Processing ; 903.1 Information Sources and Analysis ; 914.1 Accidents and Accident Prevention ; 921.4 Combinatorial Mathematics, Includes Graph Theory, Set Theory
原始文献类型Journal article (JA)
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文献类型期刊论文
条目标识符https://kms.shanghaitech.edu.cn/handle/2MSLDSTB/235979
专题生物医学工程学院_PI研究组_沈定刚组
通讯作者Qiao, Lishan; De Leone, Renato
作者单位
1.Univ Camerino, Sch Sci & Technol, Camerino, Italy
2.Liaocheng Univ, Sch Math Sci, Liaocheng, Peoples R China
3.Shandong Jianzhu Univ, Sch Comp Sci & Technol, Jinan, Peoples R China
4.ShanghaiTech Univ, Sch Biomed Engn, Shanghai, Peoples R China
5.Shanghai United Imaging Intelligence Co Ltd, Dept Res & Dev, Shanghai, Peoples R China
6.Korea Univ, Dept Artificial Intelligence, Seoul, South Korea
通讯作者单位生物医学工程学院
推荐引用方式
GB/T 7714
Jiang, Xiao,Qiao, Lishan,De Leone, Renato,et al. Joint selection of brain network nodes and edges for MCI identification[J]. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE,2022,225.
APA Jiang, Xiao,Qiao, Lishan,De Leone, Renato,&Shen, Dinggang.(2022).Joint selection of brain network nodes and edges for MCI identification.COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE,225.
MLA Jiang, Xiao,et al."Joint selection of brain network nodes and edges for MCI identification".COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 225(2022).
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