Diffusion Kernel Attention Network for Brain Disorder Classification
2022-10-01
发表期刊IEEE TRANSACTIONS ON MEDICAL IMAGING (IF:8.9[JCR-2023],11.3[5-Year])
ISSN0278-0062
EISSN1558-254X
卷号41期号:10
发表状态已发表
DOI10.1109/TMI.2022.3170701
摘要

Constructing and analyzing functional brain networks (FBN) has become a promising approach to brain disorder classification. However, the conventional successive construct-and-analyze process would limit the performance due to the lack of interactions and adaptivity among the subtasks in the process. Recently, Transformer has demonstrated remarkable performance in various tasks, attributing to its effective attention mechanism in modeling complex feature relationships. In this paper, for the first time, we develop Transformer for integrated FBN modeling, analysis and brain disorder classification with rs-fMRI data by proposing a Diffusion Kernel Attention Network to address the specific challenges. Specifically, directly applying Transformer does not necessarily admit optimal performance in this task due to its extensive parameters in the attention module against the limited training samples usually available. Looking into this issue, we propose to use kernel attention to replace the original dot-product attention module in Transformer. This significantly reduces the number of parameters to train and thus alleviates the issue of small sample while introducing a non-linear attention mechanism to model complex functional connections. Another limit of Transformer for FBN applications is that it only considers pair-wise interactions between directly connected brain regions but ignores the important indirect connections. Therefore, we further explore diffusion process over the kernel attention to incorporate wider interactions among indirectly connected brain regions. Extensive experimental study is conducted on ADHD-200 data set for ADHD classification and on ADNI data set for Alzheimer's disease classification, and the results demonstrate the superior performance of the proposed method over the competing methods. IEEE

关键词Brain Classification (of information) Complex networks Diffusion Job analysis Attention network Brain disease Brain disease classification Brain modeling Brain networks Diffusion process Disease classification Features extraction Kernel Task analysis Time-series analysis Transformer
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收录类别SCI ; SCIE ; EI
语种英语
资助项目National Natural Science Foundation of China[
WOS研究方向Computer Science ; Engineering ; Imaging Science & Photographic Technology ; Radiology, Nuclear Medicine & Medical Imaging
WOS类目Computer Science, Interdisciplinary Applications ; Engineering, Biomedical ; Engineering, Electrical & Electronic ; Imaging Science & Photographic Technology ; Radiology, Nuclear Medicine & Medical Imaging
WOS记录号WOS:000862400100022
出版者Institute of Electrical and Electronics Engineers Inc.
EI入藏号20221912091938
EI主题词Time series analysis
EI分类号461.1 Biomedical Engineering ; 716.1 Information Theory and Signal Processing ; 722 Computer Systems and Equipment ; 903.1 Information Sources and Analysis ; 922.2 Mathematical Statistics
原始文献类型Article in Press
来源库IEEE
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文献类型期刊论文
条目标识符https://kms.shanghaitech.edu.cn/handle/2MSLDSTB/180943
专题生物医学工程学院
生物医学工程学院_PI研究组_沈定刚组
作者单位
1.School of Biomedical Engineering, Sun Yat-sen University, Shenzhen, China
2.School of Electrical and Information Engineering, The University of Sydney, Sydney, NSW, Australia
3.School of Computing and Information Technology, University of Wollongong, Wollongong, NSW, Australia
4.School of Biomedical Engineering, ShanghaiTech University, Shanghai, China
推荐引用方式
GB/T 7714
Jianjia Zhang,Luping Zhou,Lei Wang,et al. Diffusion Kernel Attention Network for Brain Disorder Classification[J]. IEEE TRANSACTIONS ON MEDICAL IMAGING,2022,41(10).
APA Jianjia Zhang,Luping Zhou,Lei Wang,Mengting Liu,&Dinggang Shen.(2022).Diffusion Kernel Attention Network for Brain Disorder Classification.IEEE TRANSACTIONS ON MEDICAL IMAGING,41(10).
MLA Jianjia Zhang,et al."Diffusion Kernel Attention Network for Brain Disorder Classification".IEEE TRANSACTIONS ON MEDICAL IMAGING 41.10(2022).
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