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SYMBIOSIS: synthetic manipulable biobricks via orthogonal serine integrase systems
2022-03-21
发表期刊NUCLEIC ACIDS RESEARCH (IF:16.6[JCR-2023],16.1[5-Year])
ISSN0305-1048
EISSN1362-4962
卷号50期号:5页码:2973-2985
发表状态已发表
DOI10.1093/nar/gkac124
摘要

Serine integrases are emerging as one of the most powerful biological tools for synthetic biology. They have been widely used across genome engineering and genetic circuit design. However, developing serine integrase-based tools for directly/precisely manipulating synthetic biobricks is still missing. Here, we report SYMBIOSIS, a versatile method that can robustly manipulate DNA parts in vivo and in vitro. First, we propose a 'keys match locks' model to demonstrate that three orthogonal serine integrases are able to irreversibly and stably switch on seven synthetic biobricks with high accuracy in vivo. Then, we demonstrate that purified integrases can facilitate the assembly of 'donor' and 'acceptor' plasmids in vitro to construct composite plasmids. Finally, we use SYMBIOSIS to assemble different chromoprotein genes and create novel colored Escherichia coli. We anticipate that our SYMBIOSIS strategy will accelerate synthetic biobrick manipulation, genetic circuit design and multiple plasmid assembly for synthetic biology with broad potential applications.

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收录类别SCI ; SCIE
语种英语
资助项目National Natural Science Foundation of China[31971348,32171427] ; Natural Science Foundation of Shanghai[19ZR1477200]
WOS研究方向Biochemistry & Molecular Biology
WOS类目Biochemistry & Molecular Biology
WOS记录号WOS:000767735000001
出版者OXFORD UNIV PRESS
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文献类型期刊论文
条目标识符https://kms.shanghaitech.edu.cn/handle/2MSLDSTB/165006
专题物质科学与技术学院_硕士生
物质科学与技术学院_PI研究组_李健组
物质科学与技术学院_博士生
通讯作者Li, Jian
作者单位
ShanghaiTech Univ, Sch Phys Sci & Technol, Shanghai 201210, Peoples R China
第一作者单位物质科学与技术学院
通讯作者单位物质科学与技术学院
第一作者的第一单位物质科学与技术学院
推荐引用方式
GB/T 7714
Ba, Fang,Liu, Yushi,Wan-Qiu Liu,et al. SYMBIOSIS: synthetic manipulable biobricks via orthogonal serine integrase systems[J]. NUCLEIC ACIDS RESEARCH,2022,50(5):2973-2985.
APA Ba, Fang,Liu, Yushi,Wan-Qiu Liu,Tian, Xintong,&Li, Jian.(2022).SYMBIOSIS: synthetic manipulable biobricks via orthogonal serine integrase systems.NUCLEIC ACIDS RESEARCH,50(5),2973-2985.
MLA Ba, Fang,et al."SYMBIOSIS: synthetic manipulable biobricks via orthogonal serine integrase systems".NUCLEIC ACIDS RESEARCH 50.5(2022):2973-2985.
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