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Position 34 of tRNA is a discriminative element for m5C38 modification by human DNMT2
2021-12-16
发表期刊NUCLEIC ACIDS RESEARCH (IF:16.6[JCR-2023],16.1[5-Year])
ISSN0305-1048
EISSN1362-4962
卷号49期号:22
发表状态已发表
DOI10.1093/nar/gkab1148
摘要

Dnmt2, a member of the DNA methyltransferase superfamily, catalyzes the formation of 5-methylcytosine at position 38 in the anticodon loop of tRNAs. Dnmt2 regulates many cellular biological processes, especially the production of tRNA-derived fragments and intergenerational transmission of paternal metabolic disorders to offspring. Moreover, Dnmt2 is closely related to human cancers. The tRNA substrates of mammalian Dnmt2s are mainly detected using bisulfite sequencing; however, we lack supporting biochemical data concerning their substrate specificity or recognition mechanism. Here, we deciphered the tRNA substrates of human DNMT2 (hDNMT2) as tRNAAsp(GUC), tRNAGly(GCC), and tRNAVal(AAC). Intriguingly, for tRNAAsp(GUC) and tRNAGly(GCC), G34 is the discriminator element; whereas for tRNAVal(AAC), the inosine modification at position 34 (I34), which is formed by the ADAT2/3 complex, is the prerequisite for hDNMT2 recognition. We showed that the C32U33(G/I)34N35 (C/U)36A37C38 motif in the anticodon loop, U11:A24 in the D stem, and the correct size of the variable loop are required for Dnmt2 recognition of substrate tRNAs. Furthermore, mammalian Dnmt2s possess a conserved tRNA recognition mechanism.

关键词human DNMT2 Molecular mechanism tRNA Epigenetic
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收录类别SCI ; SCIE
语种英语
资助项目National Key Research and Development Program of China["2017YFA0504000","2020YFA0803401"] ; National Natural Science Foundation of China[91940302,31870811,32022040,31770842,32000919] ; China Postdoctoral Science Foundation[2020M671253]
WOS研究方向Biochemistry & Molecular Biology
WOS类目Biochemistry & Molecular Biology
WOS记录号WOS:000736046000036
出版者OXFORD UNIV PRESS
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文献类型期刊论文
条目标识符https://kms.shanghaitech.edu.cn/handle/2MSLDSTB/135612
专题生命科学与技术学院_PI研究组_刘如娟组
生命科学与技术学院_特聘教授组_王恩多组
生命科学与技术学院_博士生
通讯作者Wang, En-Duo; Liu, Ru-Juan
作者单位
1.Chinese Acad Sci, Ctr Excellence Mol Cell Sci, Shanghai Inst Biochem & Cell Biol, State Key Lab Mol Biol, 320 Yue Yang Rd, Shanghai 200031, Peoples R China
2.Univ Chinese Acad Sci, Beijing 100039, Peoples R China
3.ShanghaiTech Univ, Sch Life Sci & Technol, 393 Middle Hua Xia Rd, Shanghai 201210, Peoples R China
第一作者单位生命科学与技术学院
通讯作者单位生命科学与技术学院
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GB/T 7714
Huang, Zhi-Xuan,Li, Jing,Xiong, Qing-Ping,et al. Position 34 of tRNA is a discriminative element for m5C38 modification by human DNMT2[J]. NUCLEIC ACIDS RESEARCH,2021,49(22).
APA Huang, Zhi-Xuan,Li, Jing,Xiong, Qing-Ping,Li, Hao,Wang, En-Duo,&Liu, Ru-Juan.(2021).Position 34 of tRNA is a discriminative element for m5C38 modification by human DNMT2.NUCLEIC ACIDS RESEARCH,49(22).
MLA Huang, Zhi-Xuan,et al."Position 34 of tRNA is a discriminative element for m5C38 modification by human DNMT2".NUCLEIC ACIDS RESEARCH 49.22(2021).
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