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REPAIRx, a specific yet highly efficient programmable A > I RNA base editor
2020-11-16
发表期刊EMBO JOURNAL (IF:9.4[JCR-2023],11.0[5-Year])
ISSN0261-4189
EISSN1460-2075
发表状态已发表
DOI10.15252/embj.2020104748
摘要

Programmable A > I RNA editing is a valuable tool for basic research and medicine. A variety of editors have been created, but a genetically encoded editor that is both precise and efficient has not been described to date. The trade-off between precision and efficiency is exemplified in the state of the art editor REPAIR, which comprises the ADAR2 deaminase domain fused to dCas13b. REPAIR is highly efficient, but also causes significant off-target effects. Mutations that weaken the deaminase domain can minimize the undesirable effects, but this comes at the expense of on-target editing efficiency. We have now overcome this dilemma by using a multipronged approach: We have chosen an alternative Cas protein (CasRx), inserted the deaminase domain into the middle of CasRx, and redirected the editor to the nucleus. The new editor created, dubbed REPAIRx, is precise yet highly efficient, outperforming various previous versions on both mRNA and nuclear RNA targets. Thus, REPAIRx markedly expands the RNA editing toolkit and illustrates a novel strategy for base editor optimization.

关键词base editing CasRx programmable RNA
收录类别SCI ; SCIE
资助项目National Natural Science Foundation of China[81870307] ; University Special Innovative Research Program of Department of Education of Guangdong Province[2017KTSCX189]
WOS研究方向Biochemistry & Molecular Biology ; Cell Biology
WOS类目Biochemistry & Molecular Biology ; Cell Biology
WOS记录号WOS:000577754600001
出版者WILEY
引用统计
被引频次:32[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
条目标识符https://kms.shanghaitech.edu.cn/handle/2MSLDSTB/123489
专题生命科学与技术学院_硕士生
生命科学与技术学院_PI研究组_池天组
生命科学与技术学院_PI研究组_黄行许组
生命科学与技术学院_博士生
共同第一作者Mao, Shaoshuai; Huang, Shisheng
通讯作者Chi, Tian
作者单位
1.ShanghaiTech Univ, Sch Life Sci & Technol, Shanghai, Peoples R China;
2.Univ Chinese Acad Sci, Beijing, Peoples R China;
3.Chinese Acad Sci, Shanghai Inst Biol Sci, Shanghai, Peoples R China;
4.Chinese Acad Sci, Shanghai Inst Biochem & Cell Biol, Shanghai, Peoples R China;
5.Foshan Univ, Sch Stomatol & Med, Dept Basic Med & Biomed Engn, Foshan, Peoples R China;
6.Yale Univ, Sch Med, Dept Immunobiol, New Haven, CT 06519 USA
第一作者单位生命科学与技术学院
通讯作者单位生命科学与技术学院
第一作者的第一单位生命科学与技术学院
推荐引用方式
GB/T 7714
Liu, Yajing,Mao, Shaoshuai,Huang, Shisheng,et al. REPAIRx, a specific yet highly efficient programmable A > I RNA base editor[J]. EMBO JOURNAL,2020.
APA Liu, Yajing.,Mao, Shaoshuai.,Huang, Shisheng.,Li, Yongqin.,Chen, Yuxin.,...&Chi, Tian.(2020).REPAIRx, a specific yet highly efficient programmable A > I RNA base editor.EMBO JOURNAL.
MLA Liu, Yajing,et al."REPAIRx, a specific yet highly efficient programmable A > I RNA base editor".EMBO JOURNAL (2020).
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